FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index18_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 19210424 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4192755 | 2.616352 | 5.491094 | 1 |
| CCTGG | 4171500 | 2.5815687 | 6.0140033 | 1 |
| CTTCT | 4192120 | 2.5146012 | 6.128254 | 1 |
| CTGGA | 3907290 | 2.4516487 | 9.5339155 | 1 |
| TCCAG | 3850290 | 2.3654413 | 6.12957 | 2 |
| CTGCT | 3805740 | 2.3187428 | 5.465602 | 1 |
| CTCCT | 3862425 | 2.304144 | 8.60191 | 1 |
| CAGGA | 3560445 | 2.2526417 | 5.5910892 | 1 |
| CTGGG | 3558665 | 2.2492745 | 8.828924 | 1 |
| CTTCA | 3646255 | 2.2054017 | 6.3938484 | 1 |
| CTCCA | 3612720 | 2.173147 | 9.033147 | 1 |
| CCCAG | 3525170 | 2.153837 | 7.5570335 | 1 |
| CAGAA | 3301215 | 2.073428 | 5.1146317 | 1 |
| CTCTG | 3276505 | 1.9962932 | 6.884711 | 1 |
| CTGCA | 3216435 | 1.9760296 | 5.1860576 | 1 |
| CTTCC | 3251895 | 1.9399298 | 5.184899 | 1 |
| CTGGC | 3061495 | 1.8946326 | 5.928664 | 1 |
| TGGAA | 2930665 | 1.864404 | 5.446485 | 2 |
| CTGAA | 2939825 | 1.8311813 | 5.9865904 | 1 |
| CTTTT | 3002730 | 1.8110802 | 5.269214 | 1 |
| CTGAG | 2754050 | 1.7280426 | 5.401831 | 1 |
| CTCAG | 2806745 | 1.7243351 | 6.909273 | 1 |
| CTTTG | 2773510 | 1.6991398 | 5.4627113 | 1 |
| CTGGT | 2700810 | 1.6806272 | 5.5430045 | 1 |
| CTTGG | 2626745 | 1.634539 | 5.7516284 | 1 |
| CTCCC | 2580815 | 1.5311598 | 5.6092744 | 1 |